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1

IV—Précarité du domicile

L. Rolland-Piegue

Journal:

Psycho-Oncologie

Year:

2010

Language:

french

File:

PDF, 149 KB

french, 2010

2

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data

François Sabot, Nathalie Picault, Moaine El-Baidouri, Christel Llauro, Cristian Chaparro, Benoit Piegu, Anne Roulin, Emmanuel Guiderdoni, Mélissa Delabastide, Richard McCombie, Olivier Panaud

Journal:

The Plant Journal

Year:

2011

Language:

english

File:

PDF, 236 KB

english, 2011

3

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

Derelle, E., Ferraz, C., Rombauts, S., Rouze, P., Worden, A. Z., Robbens, S., Partensky, F., Degroeve, S., Echeynie, S., Cooke, R., Saeys, Y., Wuyts, J., Jabbari, K., Bowler, C., Panaud, O., Piegu, B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 1.14 MB

english, 2006

4

High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics

Christophe Sallaud, Céline Gay, Pierre Larmande, Martine Bès, Pietro Piffanelli, Benoit Piégu, Gaétan Droc, Farid Regad, Emmanuelle Bourgeois, Donaldo Meynard, Christophe Périn, Xavier Sabau, Alain Gh

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 325 KB

english, 2004

5

Genes Encoding Teleost Fish Ligands and Associated Receptors Remained in Duplicate More Frequently than the Rest of the Genome

Grandchamp, Anna, Piégu, Benoît, Monget, Philippe, Adam, Eyre-Walker

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 574 KB

english, 2019

6

Using cDNA and genomic sequences as tools to develop SNP strategies in cassava (Manihot esculentaCrantz)

C. Lopez, B. Piégu, R. Cooke, M. Delseny, J. Tohme, V. Verdier

Journal:

Theoretical and Applied Genetics

Year:

2005

Language:

english

File:

PDF, 233 KB

english, 2005

7

Analysis of the transcriptional response to Rice Yellow Mottle Virus infection inOryza sativa indicaandjaponicacultivars

M. Ventelon-Debout, T.-T.-H. Nguyen, A. Wissocq, C. Berger, M. Laudie, B. Piégu, R. Cooke, A. Ghesquière, M. Delseny, C. Brugidou

Journal:

Molecular Genetics and Genomics

Year:

2003

Language:

english

File:

PDF, 531 KB

english, 2003

8

A unigene catalogue of 5700 expressed genes in cassava

Camilo Lopez, Véronique Jorge, Benoît Piégu, Chickelu Mba, Diego Cortes, Silvia Restrepo, Mauricio Soto, Michèle Laudié, Christel Berger, Richard Cooke, Michel Delseny, Joe Tohme, Valérie Verdier

Journal:

Plant Molecular Biology

Year:

2004

Language:

english

File:

PDF, 223 KB

english, 2004

9

An EST resource for cassava and other species of Euphorbiaceae

James V. Anderson, Michel Delseny, Martin A. Fregene, Veronique Jorge, Chikelu Mba, Camilo Lopez, Silvia Restrepo, Mauricio Soto, Benoit Piegu, Valerie Verdier, Richard Cooke, Joe Tohme, David P. Horv

Journal:

Plant Molecular Biology

Year:

2004

Language:

english

File:

PDF, 193 KB

english, 2004

10

Gene expression profile in response toXanthomonas axonopodispv.manihotisinfection in cassava using a cDNA microarray

Camilo Lopez, Mauricio Soto, Silvia Restrepo, Benoît Piégu, Richard Cooke, Michel Delseny, Joe Tohme, Valérie Verdier

Journal:

Plant Molecular Biology

Year:

2005

Language:

english

File:

PDF, 577 KB

english, 2005

11

New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome

Jérôme Salse, Benoit Piégu, Richard Cooke, Michel Delseny

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 314 KB

english, 2004

12

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza

Jetty S. S. Ammiraju, Andrea Zuccolo, Yeisoo Yu, Xiang Song, Benoit Piegu, Frederic Chevalier, Jason G. Walling, Jianxin Ma, Jayson Talag, Darshan S. Brar, Phillip J. SanMiguel, Ning Jiang, Scott A. J

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 235 KB

english, 2007

13

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

Anne Roulin, Benoît Piegu, Rod A. Wing, Olivier Panaud

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 551 KB

english, 2008

14

Identification of an active LTR retrotransposon in rice

Nathalie Picault, Christian Chaparro, Benoit Piegu, Willfried Stenger, Damien Formey, Cristel Llauro, Julie Descombin, Francois Sabot, Eric Lasserre, Donaldo Meynard, Emmanuel Guiderdoni, Olivier Pana

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 753 KB

english, 2009

15

Maize Sh2 gene is constrained by natural selection but escaped domestication

D. MANICACCI, M. FALQUE, S. LE GUILLOU, B. PIÉGU, A.-M. HENRY, M. LE GUILLOUX, C. DAMERVAL, D. DE VIENNE

Journal:

Journal of Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 1.60 MB

english, 2007

16

ATR3 encodes a diflavin reductase essential for Arabidopsis embryo development

Janani Varadarajan, Jocelyne Guilleminot, Claude Saint-Jore-Dupas, Benoît Piégu, Marie-Edith Chabouté, Véronique Gomord, Ronald C. Coolbaugh, Martine Devic, Valérie Delorme

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 2.81 MB

english, 2010

17

Genomic comparison between Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola, using suppression-subtractive hybridization

Mauricio Soto-Suárez, Carolina González, Benoît Piégu, Joe Tohme, Valérie Verdier

Journal:

FEMS Microbiology Letters

Year:

2010

Language:

english

File:

PDF, 196 KB

english, 2010

18

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposonRoute66inPoaceae

Anne Roulin, Benoit Piegu, Philippe M Fortune, François Sabot, Angélique D'Hont, Domenica Manicacci, Olivier Panaud

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 732 KB

english, 2009

19

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

Séverine Lacombe, Hiroshi Nagasaki, Carole Santi, David Duval, Benoît Piégu, Martine Bangratz, Jean-Christophe Breitler, Emmanuel Guiderdoni, Christophe Brugidou, Judith Hirsch, Xiaofeng Cao, Claire B

Journal:

BMC Plant Biology

Year:

2008

Language:

english

File:

PDF, 1.59 MB

english, 2008

20

Complete genome sequence of invertebrate iridescent virus 22 isolated from a blackfly larva

Piegu, B., Guizard, S., Spears, T., Cruaud, C., Couloux, A., Bideshi, D. K., Federici, B. A., Bigot, Y.

Journal:

Journal of General Virology

Year:

2013

Language:

english

File:

PDF, 563 KB

english, 2013

21

Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea

Piégu, Benoît, Guizard, Sébastien, Spears, Tatsinda, Cruaud, Corinne, Couloux, Arnault, Bideshi, Dennis K., Federici, Brian A., Bigot, Yves

Journal:

Journal of Invertebrate Pathology

Year:

2014

Language:

english

File:

PDF, 633 KB

english, 2014

22

Transposase concentration controls transposition activity: Myth or reality?

Bire, Solenne, Casteret, Sophie, Arnaoty, Ahmed, Piégu, Benoît, Lecomte, Thierry, Bigot, Yves

Journal:

Year:

2013

Language:

english

File:

PDF, 533 KB

english, 2013

23

Characteristics of inteins in invertebrate iridoviruses and factors controlling insertion in their viral hosts

Bigot, Yves, Piégu, Benoît, Casteret, Sophie, Gavory, Frédérick, Bideshi, Dennis K., Federici, Brian A.

Journal:

Molecular Phylogenetics and Evolution

Year:

2013

Language:

english

File:

PDF, 2.13 MB

english, 2013

24

ATR3 encodes a diflavin reductase essential for Arabidopsis embryo development

Janani Varadarajan, Jocelyne Guilleminot, Claude Saint-Jore-Dupas, Benoît Piégu, Marie-Edith Chabouté, Véronique Gomord, Ronald C. Coolbaugh, Martine Devic and Valérie Delorme

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 3.45 MB

english, 2010

25

Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva

Piégu, Benoît, Guizard, Sébastien, Spears, Tatsinda, Cruaud, Corinne, Couloux, Arnault, Bideshi, Dennis K., Federici, Brian A., Bigot, Yves

Journal:

Archives of Virology

Year:

2014

Language:

english

File:

PDF, 319 KB

english, 2014

26

Evolutionary relationships of iridoviruses and divergence of ascoviruses from invertebrate iridoviruses in the superfamily Megavirales

Piégu, Benoît, Asgari, Sassan, Bideshi, Dennis, Federici, Brian A., Bigot, Yves

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

27

A survey of transposable element classification systems – A call for a fundamental update to meet the challenge of their diversity and complexity

Piégu, Benoît, Bire, Solenne, Arensburger, Peter, Bigot, Yves

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

28

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

Salse, J., Bolot, S., Throude, M., Jouffe, V., Piegu, B., Quraishi, U. M., Calcagno, T., Cooke, R., Delseny, M., Feuillet, C.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.01 MB

english, 2008

29

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves, Carré, Isabelle, Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, R

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

30

Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

Piegu, B., Guyot, R., Picault, N., Roulin, A., Saniyal, A., Kim, H., Collura, K., Brar, D. S., Jackson, S., Wing, R. A., Panaud, O.

Journal:

Genome Research

Year:

2006

Language:

english

File:

PDF, 794 KB

english, 2006

31

Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, Armadillidium vulgare

Piegu, B., Guizard, S., Yeping, T., Cruaud, C., Asgari, S., Bideshi, D. K., Federici, B. A., Bigot, Y.

Journal:

Journal of General Virology

Year:

2014

Language:

english

File:

PDF, 412 KB

english, 2014

32

RetrOryza: a database of the rice LTR-retrotransposons

Chaparro, C., Guyot, R., Zuccolo, A., Piegu, B., Panaud, O.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 3.00 MB

english, 2007

33

FCGR2C genotyping by pyrosequencing reveals linkage disequilibrium with FCGR3A V158F and FCGR2A H131R polymorphisms in a Caucasian population

Lejeune, Julien, Piègu, Benoît, Gouilleux-Gruart, Valérie, Ohresser, Marc, Watier, Hervé, Thibault, Gilles

Journal:

Year:

2012

Language:

english

File:

PDF, 618 KB

english, 2012

34

DensityMap: a genome viewer for illustrating the densities of features

Guizard, Sébastien, Piégu, Benoît, Bigot, Yves

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

35

Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larva

Piégu, Benoît, Guizard, Sébastien, Yeping, Tan, Cruaud, Corinne, Couloux, Arnault, Bideshi, Dennis K., Federici, Brian A., Bigot, Yves

Journal:

Standards in Genomic Sciences

Year:

2014

Language:

english

File:

PDF, 3.17 MB

english, 2014

36

Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors of Cultivated Rices

Roulin, A., Chaparro, C., Piegu, B., Jackson, S., Panaud, O.

Journal:

Genome Biology and Evolution

Year:

2010

Language:

english

File:

PDF, 351 KB

english, 2010

37

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

Jérôme Salse, Stéphanie Bolot, Michaël Throude, Vincent Jouffe, Benoît Piegu, Umar Masood Quraishi, Thomas Calcagno, Richard Cooke, Michel Delseny and Catherine Feuillet

Journal:

Year:

2008

Language:

english

File:

PDF, 2.84 MB

english, 2008

38

The future of transposable element annotation and their classification in the light of functional genomics - what we can learn from the fables of Jean de la Fontaine?

Arensburger, Peter, Piégu, Benoît, Bigot, Yves

Journal:

Mobile Genetic Elements

Year:

2016

Language:

english

File:

PDF, 628 KB

english, 2016

39

An Assessment of Fixed and Native Chromatin Preparation Methods to Study Histone Post-Translational Modifications at a Whole Genome Scale in Skeletal Muscle Tissue

David, Sarah-Anne, Piégu, Benoît, Hennequet-Antier, Christelle, Pannetier, Maëlle, Aguirre-Lavin, Tiphaine, Crochet, Sabine, Bordeau, Thierry, Couroussé, Nathalie, Brionne, Aurélien, Bigot, Yves, Coll

Journal:

Biological Procedures Online

Year:

2017

Language:

english

File:

PDF, 2.34 MB

english, 2017

40

Mariner Transposons Contain a Silencer: Possible Role of the Polycomb Repressive Complex 2

Bire, Solenne, Casteret, Sophie, Piégu, Benoît, Beauclair, Linda, Moiré, Nathalie, Arensbuger, Peter, Bigot, Yves, Feschotte, Cédric

Journal:

Year:

2016

Language:

english

File:

PDF, 1.86 MB

english, 2016

41

Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

Guizard, Sébastien, Piégu, Benoît, Arensburger, Peter, Guillou, Florian, Bigot, Yves

Journal:

Year:

2016

Language:

english

File:

PDF, 2.83 MB

english, 2016

42

But where did the centromeres go in the chicken genome models?

Piégu, Benoît, Arensburger, Peter, Guillou, Florian, Bigot, Yves

Journal:

Chromosome Research

Year:

2018

Language:

english

File:

PDF, 526 KB

english, 2018

43

Anti-angiogenic VEGFAxxxb transcripts are not expressed in the medio-basal hypothalamus of the seasonal sheep

Lomet, Didier, Piégu, Benoît, Wood, Shona H., Dardente, Hugues, Ruhrberg, Christiana

Journal:

Year:

2018

Language:

english

File:

PDF, 5.68 MB

english, 2018

44

Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium

Locatelli, Yann, Forde, Niamh, Blum, Helmut, Graf, Alexander, Piégu, Benoît, Mermillod, Pascal, Wolf, Eckhard, Lonergan, Patrick, Saint-Dizier, Marie

Journal:

Year:

2019

Language:

english

File:

PDF, 2.35 MB

english, 2019

45

Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

Beauclair, Linda, Ramé, Christelle, Arensburger, Peter, Piégu, Benoît, Guillou, Florian, Dupont, Joëlle, Bigot, Yves

Journal:

Year:

2019

File:

PDF, 3.50 MB

2019

46

Variations in genome size between wild and domesticated lineages of fowls belonging to the Gallus gallus species

Piégu, Benoît, Arensburger, Peter, Beauclair, Linda, Chabault, Marie, Raynaud, Emilie, Coustham, Vincent, Brard, Sophie, Guizard, Sébastien, Burlot, Thierry, Le Bihan-Duval, Elisabeth, Bigot, Yves

Journal:

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019